Hello,
Thanks for the inquiry. I would suggest to look into the possibility of the calendar XML file directory is not being scanned or reviewed by any third party security applications. There should be no application looking the SmarterTools folders and trying to remove any .xml files. I have observed instances of the .XML file [AE1279A3_calendarData.xml] becoming corrupt or damaged but replacing the file from a backup should correct the matter.
I would check the size of XML file that was replaced and see if there is any difference. I would stop the SmarterMail service, replace the file in the user directory and then restart the SmarterMail service again.
Thanks.